Syllabuses - PG

CS828 - Introduction to Bioinformatics

TIMETABLETEACHING MATERIAL
Credits10
Level5
SemesterSemester 1
Mode of Delivery
  • Attendance
Availability

Mandatory for MSc in Industrial Biotechnology | Elective for MSc in Digital Health Systems

Prerequisites

None

Learning Activities Breakdown

Lectures: 10 hours  |  Tutorials: 5 hours  |  Labs: 10 hours  |  Self-directed study: 75 hours

Items of Assessment2
Assessment
  1. First coursework assignment (50%): Students will be asked to conduct a piece of research using techniques and approaches introduced in the first half of the module, submitting their work in Jupyter notebook format. The focus will be on the ability to identify and integrate data from multiple sources, as well as reproducibility, understanding and presentation of results.
  2. Second coursework assignment (50%): Students will be asked to conduct a piece of research using techniques and approaches from across the entire module, submitting their work as a report in pdf format. The focus will be on identifying and integrating data from multiple sources, appropriateness of analysis, as well as understanding and presentation of results.
ILO Assessment Mapping

Learning objectives (LOs) - After completing this module, students will be able to:
1) apply core concepts of genetics and genomics (such as gene structure and expression) to interpret biological datasets;
2) evaluate major DNA/RNA sequencing technologies and common bioinformatics tools for defined research problems;
3) integrate, process and analyse real-world biological data from multiple scientific databases and in various formats;
4) design and implement reproducible bioinformatics workflows in Jupyter Notebook using existing libraries and tools;
5) communicate analytical findings and justify methodological decisions in a structured and concise scientific report.

The assessments are mapped to the LOs above in the following way:
- coursework 1: LOs 1, 2, 3, 4
- coursework 2: LOs 1, 2, 3, 5

Education for Sustainable Development Competences
  • Systems Thinking
  • Problem Solving
  • Critical Thinking
  • Self-awareness
Pedagogical Methods Used to Support Competency Development
Sustainable Development Goals
  • Good health and well-being
  • Quality education
  • Partnerships for the goal
Resit

Single coursework assignment (100%): Students will be asked to conduct a piece of research using techniques and approaches from across the entire module, submitting their work as a report in pdf format. The focus will be on identifying and integrating data from multiple sources, appropriateness of analysis, as well as understanding and presentation of results.

LecturerDidier Devaurs

Aims and Objectives

This module provides key concepts, knowledge and understanding of bioinformatics and computational biology. It enables students to understand how biological data is represented computationally, and how it can be integrated and analysed to inform research and practices in industry. It is a highly practical module, which emphasises direct application of techniques; it involves the same tools and datasets that bioinformatics practitioners and researchers use in their day-to-day roles.

Learning Outcomes

  • Computational representation and management of real-world biological data
  • Integration and analysis of large-scale datasets
  • Programming in Python
  • Reproducible research and computational practice
  • Critical appraisal of data and evidence to inform research

Syllabus

There will be a series of ten lectures delivered in a partially flipped format (as students will be expected to read relevant material ahead of time) with time for questions and discussion. Students will attend five on-campus practical computational laboratory sessions, which will be run using Python in Jupyter notebooks. Students will also attend five tutorials before practical labs, which will act as a bridge between theory and practice. Students will learn what programming features, libraries and platforms are there for bioinformatics tools and how that can be linked with theory covered in lectures.

Recommended Reading

This list is indicative only – the class lecturer may recommend alternative reading material. Please do not purchase any of the reading material listed below until you have confirmed with the class lecturer that it will be used for this class.

Various items of reading material will be suggested on the MyPlace page of this module. 

Last updated: 2026-08-11 12:40:39